Comparing active site sequence representations for kinase-ligand affinity predictionJannis BornTien Huynhet al.2022ACS Fall 2022
Molecular dynamics as a data source: scaling simulation for building AI modelsJoseph MorroneJeff Weberet al.2023ACS Fall 2023
Characterization of small molecule latent spaces derived from a variety of generative molecule creation approachesWendy Cornell2023ACS Fall 2023
Graph-based 3D Generative Small-Molecule Modeling Targeting for Multi Proteins with Enhanced Binding CompatibilitySeung Gu KangJeff Weberet al.2023ACS Fall 2023
Active site sequence representation of human kinases outperforms full sequence for affinity prediction and inhibitor generation: 3D effects in a 1D modelJannis BornTien Huynhet al.2022ACS Spring 2022
Active site sequence representation of human kinases outperforms full sequence for affinity predictionJannis BornTien Huynhet al.2021NeurIPS 2021
SPARK: Harnessing Human-Centered Workflows with Biomedical Foundation Models for Drug DiscoveryBc KwonSimona Rabinovici-Cohenet al.2024IJCAI 2024
Unsupervised and supervised AI on molecular dynamics simulations reveals complex characteristics of HLA-A2-peptide immunogenicityJeff WeberJoseph Morroneet al.2024Briefings in Bioinformatics
In-Pocket 3D Graphs Enhance Ligand-Target Compatibility in Generative Small-Molecule CreationSeung Gu KangJeff Weberet al.2022arXiv