Conformal Autoregressive Generation: Beam Search with Coverage GuaranteesNicolas DeutschmannMarvin Albertset al.2024AAAI 2024
On the automation of de-novo molecular design and chemical synthesis planning: A case study on SARS-CoV-2Jannis BornMatteo Manicaet al.2021ACS Fall 2021
Is Attention Interpretation? A Quantitative Assessment On SetsJonathan HaabNicolas Deutschmannet al.2022NeurIPS 2022
Pre-training Protein Language Models with Label-Agnostic Binding Pairs Enhances Performance in Downstream TasksModestas FilipaviciusMatteo Manicaet al.2020NeurIPS 2020
PaccMannRL on SARS-CoV-2: Designing antiviral candidates with conditional generative modelsJannis BornMatteo Manicaet al.2020ICML 2020
edGNN: A simple and powerful GNN for directed labeled graphsGuillaume JaumeAn-Phi Nguyenet al.2019ICLR 2019
Fuzzy Logic for Biological Networks as ML Regression: Scaling to Single-Cell Datasets With AutogradConstance Le GacAlice Driessenet al.2022NeurIPS 2022
MonoNet: Towards Interpretable Models by Learning Monotonic FeaturesAn-Phi NguyenMaria Rodriguez Martinez2019NeurIPS 2019
PaccMannRL: Designing anticancer drugs from transcriptomic data via reinforcement learningJannis BornMatteo Manicaet al.2019NeurIPS 2019
PaccMann: Prediction of anticancer compound sensitivity with multi-modal attention-based neural networksAli Kazemi OskooeiJannis Bornet al.2018NeurIPS 2018