Challenges in benchmarking metagenomic profilers
- Zheng Sun
- Shi Huang
- et al.
- 2021
- Nature Methods
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33 results for Niina Haiminen
Functional profiling of COVID-19 respiratory tract microbiomes
- Niina Haiminen
- Filippo Utro
- et al.
- 2021
- Scientific Reports
Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences
- Anna Paola Carrieri
- Niina Haiminen
- et al.
- 2021
- Scientific Reports
Monitoring the microbiome for food safety and quality using deep shotgun sequencing
- Kristen L. Beck
- Niina Haiminen
- et al.
- 2021
- npj Science of Food
Food authentication from shotgun sequencing reads with an application on high protein powders
- Niina Haiminen
- Stefan Edlund
- et al.
- 2019
- npj Science of Food
Evaluation of methods for de novo genome assembly from High-Throughput sequencing reads reveals dependencies that affect the quality of the results
- Niina Haiminen
- David N. Kuhn
- et al.
- 2011
- PLoS ONE
Scalable algorithms at genomic resolution to fit LD distributions
- Laxmi Parida
- Niina Haiminen
- 2016
- BCB 2016
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
- Justin P. Shaffer
- Louis-Félix Nothias
- et al.
- 2022
- Nature Microbiology
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
- Clarisse Marotz
- Pedro Belda-Ferre
- et al.
- 2021
- Microbiome
Empress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets
- Kalen Cantrell
- Marcus W. Fedarko
- et al.
- 2021
- mSystems