Functional profiling of COVID-19 respiratory tract microbiomes
- Niina Haiminen
- Filippo Utro
- et al.
- 2021
- Scientific Reports
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Driver gene classification reveals a substantial overrepresentation of tumor suppressors among very large chromatin-regulating proteins
- Zeev Waks
- Omer Weissbrod
- et al.
- 2016
- Scientific Reports
Evolutionary history of transformation from chronic lymphocytic leukemia to Richter syndrome
- Erin M. Parry
- Ignaty Leshchiner
- et al.
- 2023
- Nature Medicine
Distinct cellular dynamics associated with response to CAR-T therapy for refractory B cell lymphoma
- Nicholas J. Haradhvala
- Mark B. Leick
- et al.
- 2022
- Nature Medicine
Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers
- Aparna R. Parikh
- Ignaty Leshchiner
- et al.
- 2019
- Nature Medicine
Essential simplices in persistent homology and subtle admixture detection
- Saugata Basu
- Filippo Utro
- et al.
- 2018
- WABI 2018
A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones
- Filippo Utro
- Chaya Levovitz
- et al.
- 2021
- BMC Genomics
Multiple loci selection with multi-way Epistasis in coalescence with recombination
- Aritra Bose
- Filippo Utro
- et al.
- 2021
- Algorithms
Re-purposing software for functional characterization of the microbiome
- Laura-Jayne Gardiner
- Niina Haiminen
- et al.
- 2021
- Microbiome
Transcriptome characterization and differentially expressed genes under flooding and drought stress in the biomass grasses Phalaris arundinacea and Dactylis glomerata
- Manfred Klaas
- Niina Haiminen
- et al.
- 2019
- Annals of Botany